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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000328
species: Brassica rapa
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 GATGATGCTTGGCTCGAGA

mismatches: 3
bulges: 0
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pre-miRNA
 TCTCTGAGCCAAAAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTAAATATGATCATTGTGATGTTGATGATGATGATGATAATGATAATGATAGTCG
GACCAGGCTTCATTCCCCTCAACTTACACGTTTTGC

dot-bracket secondary structure
............(((((.(((.((((((.((((((.((((...(((((..(((.((((((((.((.......)).)))))))).))).)))))....)))
).)))))).)))))).))).)))))...........


SIMILARITIES
miRBase bna-MIR166c: 1e-25

PMRD bna-miR166c: 1e-25

microPC miR166: 0.00003		UniProt no hits

RFAM mir-166: 6e-19		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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