ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 2 bulges: 0 |
pre-miRNA
ATCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATA
dot-bracket secondary structure
)....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATA
dot-bracket secondary structure
)....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))...
SIMILARITIES| miRBase bra-MIR171b: 5.0E-49 PMRD bra-miR171b: 5.0E-49 microPC miR171: 3.0E-7 | UniProt no hits RFAM 1MIR171_1: 6.0E-15 | most similar mature miRNAs |
Identical with: bna-miR171a from PMRD (MNEST048363), bra-miR171b from PMRD , bra-MIR171b from miRBase , bna-MIR171a from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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