ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATATTAGTGCGGTTCAATC miRNA* TTGAGCCGTGCCAATATCACG mismatches: 2 bulges: 0 |
pre-miRNA
GTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATAT
dot-bracket secondary structure
.....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATAT
dot-bracket secondary structure
.....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))....
SIMILARITIES| miRBase bra-MIR171b: 3e-50 PMRD bra-miR171b: 3e-50 microPC miR171: 0.0000003 | UniProt no hits RFAM MIR171_1: 0.000000000000006 | most similar mature miRNAs |
Identical with: bna-miR171a from PMRD (MNEST048363) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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