miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000330
species: Brassica rapa
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGATATTAGTGCGGTTCAATC

miRNA*
 TTGAGCCGTGCCAATATCACG

mismatches: 2
bulges: 0
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pre-miRNA
 GTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATAT

dot-bracket secondary structure
.....(((.((((((.(((((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))))).)))))).)))....


SIMILARITIES
miRBase bra-MIR171b: 3e-50

PMRD bra-miR171b: 3e-50

microPC miR171: 0.0000003		UniProt no hits

RFAM MIR171_1: 0.000000000000006		most similar mature miRNAs

Identical with: bna-miR171a from PMRD (MNEST048363)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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