ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCCT miRNA* GAAGAAGAAGAGTGAAGAGTGAA mismatches: 2 bulges: 2 |
pre-miRNA
GGACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCCTTAAAAGTCCCTTCCTCTT
CCTCTTCCTCTTCCTCGAACCACA
dot-bracket secondary structure
((...((.(((((.((((((.((((((.(((((.((.....(((..((.......)).)))....))..))....((((........)))).))))))))
))))))).))))).))...))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCCTTAAAAGTCCCTTCCTCTT
CCTCTTCCTCTTCCTCGAACCACA
dot-bracket secondary structure
((...((.(((((.((((((.((((((.(((((.((.....(((..((.......)).)))....))..))....((((........)))).))))))))
))))))).))))).))...))...
SIMILARITIES| miRBase mtr-MIR2673b: 0.000006 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
