ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCATAGCATCATGAGCAATCA miRNA* ACTGCTAATGATGTTATCTCAT mismatches: 3 bulges: 1 |
pre-miRNA
TATGTAAACCACCAAGAACATGCATAGCATCATGAGCAATCAGCCTTGGAAATATTTTTGAGCAAGTGACTGCTAATGATGTTATCTCATTTCTTGATGG
CTCTTCTT
dot-bracket secondary structure
........(((.((((((.(((.((((((((((.((((.(((..(((((((....)))))))....))).)))).))))))))))..))))))))).)))
........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGTAAACCACCAAGAACATGCATAGCATCATGAGCAATCAGCCTTGGAAATATTTTTGAGCAAGTGACTGCTAATGATGTTATCTCATTTCTTGATGG
CTCTTCTT
dot-bracket secondary structure
........(((.((((((.(((.((((((((((.((((.(((..(((((((....)))))))....))).)))).))))))))))..))))))))).)))
........
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 0.000000001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
