ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCATA miRNA* TGCTCACTTCTCTTGCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AAAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAACAATTGTATAGAGAGGTATACACTTGTAAATATGCGTGTGCTCACTTCTCTTGCTGTCAGCT
ACTCGGT
dot-bracket secondary structure
........((((((((((((((((((((((((((((.((((.((((((......)))))).)))).....))))))))))))).)))))).)))))))))
.......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAAAAGAAAGCTGACAGAAGAGAGTGAGCATATGCAAACAATTGTATAGAGAGGTATACACTTGTAAATATGCGTGTGCTCACTTCTCTTGCTGTCAGCT
ACTCGGT
dot-bracket secondary structure
........((((((((((((((((((((((((((((.((((.((((((......)))))).)))).....))))))))))))).)))))).)))))))))
.......
SIMILARITIES| miRBase zma-MIR156c: 0.0000003 PMRD zma-miR156c: 0.0000003 microPC miR156: 1e-43 | UniProt no hits RFAM mir-156: 0.0004 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046798) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
