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ABOUT THIS RECORD

ID: MNEST000341
species: Cichorium intybus
miRNA family: miR393b
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCATGCGATCTCTTTGGAAG

miRNA*
TCCAAAGGGACCGCATTGATCC

mismatches: 1
bulges: 1

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pre-miRNA
ATGTTGCAGCAGGTGGAAGCTTCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCT
GCAAATTTTTTTATCCAAGCTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGTGGCCCTC


dot-bracket secondary structure
........((.((((((((((((((((((((.(((((.(((((((.(((((.((.(((..((...(((.....)))....))..))).)).))..(((((
.................))))).))).)))))))))))).)))))))))))))))))).))...))....



SIMILARITIES
miRBase sbi-MIR393: 0.0001

PMRD sbi-miR393: 0.0001

microPC miR393: 2e-56
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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