miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000341
species: Cichorium intybus
miRNA family: miR393b
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATCATGCGATCTCTTTGGAAG

miRNA*
 TCCAAAGGGACCGCATTGATCC

mismatches: 1
bulges: 1
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pre-miRNA
 ATGTTGCAGCAGGTGGAAGCTTCCAAAGGGACCGCATTGATCCAGTTTATTAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCT
GCAAATTTTTTTATCCAAGCTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGTGGCCCTC

dot-bracket secondary structure
........((.((((((((((((((((((((.(((((.(((((((.(((((.((.(((..((...(((.....)))....))..))).)).))..(((((
.................))))).))).)))))))))))).)))))))))))))))))).))...))....


SIMILARITIES
miRBase sbi-MIR393: 0.0001

PMRD sbi-miR393: 0.0001

microPC miR393: 2e-56		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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