ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTT miRNA* GGGATGTTGGCTGGCTCGGTG mismatches: 2 bulges: 2 |
pre-miRNA
TGAGACAAGCAGTGGTTTGTGAGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCAT
TCCTTTCAAACCCTTTTGTGATT
dot-bracket secondary structure
)...(((((.((.((((((.((((((((..((((((.(((((((.((((((((((..(((......)))..)))))))))).))))))).))).))).)))
))))).)))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAGACAAGCAGTGGTTTGTGAGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCAT
TCCTTTCAAACCCTTTTGTGATT
dot-bracket secondary structure
)...(((((.((.((((((.((((((((..((((((.(((((((.((((((((((..(((......)))..)))))))))).))))))).))).))).)))
))))).)))))))))))))....
SIMILARITIES| miRBase vvi-MIR166b: 2.0E-5 PMRD ini-miR166: 2.0E-9 microPC miR166: 2.0E-42 | UniProt no hits RFAM 6mir-166: 0.0004 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045937) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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