miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000345
species: Cichorium intybus
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTT

miRNA*
GGGATGTTGGCTGGCTCGGTG

mismatches: 2
bulges: 2

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pre-miRNA
GAGACAAGCAGTGGTTTGTGAGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCAT
TCCTT
TCAAACCCTTTTGTGATT


dot-bracket secondary structure
...(((((.((.((((((.((((((((..((((((.(((((((.((((((((((..(((......)))..)))))))))).))))))).))).))).)))
)))))
.)))))))))))))....



SIMILARITIES
miRBase vvi-MIR166b: 0.00002

PMRD ini-miR166: 0.000000002

microPC miR166: 2e-42
UniProt no hits

RFAM mir-166: 0.0004
most similar mature miRNAs

Identical with: miR166 from microPC (MNEST045937)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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