ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAACATGATCTT miRNA* GTCATCCTTGCAGCTTCAAT mismatches: 4 bulges: 1 |
pre-miRNA
CTTTATGCTGATTTGAGAGATTGAAGCTGCCAACATGATCTTGGTGATGCCAAACTGGGTCGCCTGTGTCTGATTGTCCATATATGAGTGGACAATGTCA
AGGCTCTATACATAGGCAAATGGCCGGGCGTGTGTTTTTGGTGATGTGTTCGTATCTGTTCATGGGTTGAGAAAGGAGAGGTTAACCAGGTCATCCTTGC
AGCTTCAATCACTCATGCCCAACAATT
dot-bracket secondary structure
......((.....((((.((((((((((((....((((.((((((..(((((((......((((((.(((...(((((.((.(((((((.(((...))).
..)))).))).)).)))))..)))))))))......))))))).((...((...(((.((((.....))))...)))..)).))))))))))))....))
)))))))))).)))).)).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTTTATGCTGATTTGAGAGATTGAAGCTGCCAACATGATCTTGGTGATGCCAAACTGGGTCGCCTGTGTCTGATTGTCCATATATGAGTGGACAATGTCA
AGGCTCTATACATAGGCAAATGGCCGGGCGTGTGTTTTTGGTGATGTGTTCGTATCTGTTCATGGGTTGAGAAAGGAGAGGTTAACCAGGTCATCCTTGC
AGCTTCAATCACTCATGCCCAACAATT
dot-bracket secondary structure
......((.....((((.((((((((((((....((((.((((((..(((((((......((((((.(((...(((((.((.(((((((.(((...))).
..)))).))).)).)))))..)))))))))......))))))).((...((...(((.((((.....))))...)))..)).))))))))))))....))
)))))))))).)))).)).........
SIMILARITIES| miRBase csi-MIR167c: 0.0000002 PMRD vvi-miR167a: 0.00005 microPC miR167: 3e-55 | UniProt no hits RFAM MIR167_1: 0.000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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