ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCT miRNA* GGACTGTTGTCTGGCTCGATG mismatches: 4 bulges: 0 |
pre-miRNA
GAGAAAAATGATTGTTTCTGAGGGGACTGTTGTCTGGCTCGATGCATTAATAATAATTATAATTATATAATTATAATTATCATGAAAAAAGGGTATCGGA
CCAGGCTTCATTCCCTTCAGAATCAAATTCATTGTT
dot-bracket secondary structure
......((((((((.(((((((((((.((..((((((.(((((((....((.((((((((((((....)))))))))))).)).........))))))).
))))))..)).))))))))))).)))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGAAAAATGATTGTTTCTGAGGGGACTGTTGTCTGGCTCGATGCATTAATAATAATTATAATTATATAATTATAATTATCATGAAAAAAGGGTATCGGA
CCAGGCTTCATTCCCTTCAGAATCAAATTCATTGTT
dot-bracket secondary structure
......((((((((.(((((((((((.((..((((((.(((((((....((.((((((((((((....)))))))))))).)).........))))))).
))))))..)).))))))))))).)))..)))))...
SIMILARITIES| miRBase crt-MIR166b: 1e-25 PMRD ath-miR166b: 0.000002 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
