miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000381
species: Citrus reticulata
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCT

miRNA*
 GGACTGTTGTCTGGCTCGATG

mismatches: 4
bulges: 0
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pre-miRNA
 GAGAAAAATGATTGTTTCTGAGGGGACTGTTGTCTGGCTCGATGCATTAATAATAATTATAATTATATAATTATAATTATCATGAAAAAAGGGTATCGGA
CCAGGCTTCATTCCCTTCAGAATCAAATTCATTGTT

dot-bracket secondary structure
......((((((((.(((((((((((.((..((((((.(((((((....((.((((((((((((....)))))))))))).)).........))))))).
))))))..)).))))))))))).)))..)))))...


SIMILARITIES
miRBase crt-MIR166b: 1e-25

PMRD ath-miR166b: 0.000002

microPC miR166: 0.0001		UniProt no hits

RFAM mir-166: 0.00003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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