ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCCGT miRNA* GGGAATGTTGTTTGGCTCGAG mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTTGGCTCGAGGGTCATCTAGGTTTTCAAAATTTTCTCGGACTTTCTTTCTTGCTTTTATTTTTCCAG
GAAAATTATGTTATTTGCCTATGTGATCTCGGACCAGGCTTCATTCCCGTCAACCGACGGTTTCTCTCT
dot-bracket secondary structure
.....((((((...(((((((((((((((..((((((.((((((.((((.(((((...((.((((((((.(((......................))).)
))))))).))......))))).)))))))))).))))))..)))))))))))))))......)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTTGGCTCGAGGGTCATCTAGGTTTTCAAAATTTTCTCGGACTTTCTTTCTTGCTTTTATTTTTCCAG
GAAAATTATGTTATTTGCCTATGTGATCTCGGACCAGGCTTCATTCCCGTCAACCGACGGTTTCTCTCT
dot-bracket secondary structure
.....((((((...(((((((((((((((..((((((.((((((.((((.(((((...((.((((((((.(((......................))).)
))))))).))......))))).)))))))))).))))))..)))))))))))))))......)))))).
SIMILARITIES| miRBase csi-MIR166b: 6e-93 PMRD sbi-miR166a: 0.0000001 microPC miR166: 0.0000001 | UniProt no hits RFAM mir-166: 0.000000003 | most similar mature miRNAs |
Identical with: csi-MIR166b from miRBase (MNEST041223) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
