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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000430
species: Citrus sinensis
miRNA family: MIRf493
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGACCAGGCTTCATTCCCGT

miRNA*
 GGGAATGTTGTTTGGCTCGAG

mismatches: 3
bulges: 0
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pre-miRNA
 TTTTTGAGAGGTTATGGTTGATGGGAATGTTGTTTGGCTCGAGGGTCATCTAGGTTTTCAAAATTTTCTCGGACTTTCTTTCTTGCTTTTATTTTTCCAG
GAAAATTATGTTATTTGCCTATGTGATCTCGGACCAGGCTTCATTCCCGTCAACCGACGGTTTCTCTCT

dot-bracket secondary structure
.....((((((...(((((((((((((((..((((((.((((((.((((.(((((...((.((((((((.(((......................))).)
))))))).))......))))).)))))))))).))))))..)))))))))))))))......)))))).


SIMILARITIES
miRBase csi-MIR166b: 6e-93

PMRD sbi-miR166a: 0.0000001

microPC miR166: 0.0000001		UniProt no hits

RFAM mir-166: 0.000000003		most similar mature miRNAs

Identical with: csi-MIR166b from miRBase (MNEST041223)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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