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ABOUT THIS RECORD

ID: MNEST000432
species: Citrus sinensis
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCAAGAAATCTGTGGGAAGA

miRNA*
 TTTCCACAGCTTTCTTGAACT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ATGATGCAAGTTCCTGTCATGTTTTTCCACAGCTTTCTTGAACTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCCTCTAATAATAGGCTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAGTTCAAGAAATCTGTGGGAAGAAATGGCAAATAAGGACTTA
A

dot-bracket secondary structure
.......((((((.((((((.(((((((((((.((((((((((((((((.((................................................
...............)).))..(((((((......)))))))(((....)))...)))))))))))))).))))))))))).)))))).....)))))).
.


SIMILARITIES
miRBase csi-MIR396c: 4e-39

PMRD osa-miR396c: 0.00001

microPC miR396: 6e-32		UniProt no hits

RFAM MIR396: 0.0002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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