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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST000432
species:
Citrus sinensis
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCAAGAAATCTGTGGGAAGA
miRNA*
TTTCCACAGCTTTCTTGAACT
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATGATGCAAGTTCCTGTCATGTT
TTTCCACAGCTTTCTTGAACT
TCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCCTCTAATAATAGGCTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAG
TTCAAGAAATCTGTGGGAAGA
AATGGCAAATAAGGACTTA
A
dot-bracket secondary structure
.......((((((.((((((.((
(((((((((.(((((((((((
(((((.((................................................
...............)).))..(((((((......)))))))(((....)))...)))))
))))))))).)))))))))))
.)))))).....)))))).
.
SIMILARITIES
miRBase
csi-MIR396c
:
4e-39
PMRD
osa-miR396c
:
0.00001
microPC
miR396
:
6e-32
UniProt
no hits
RFAM
MIR396: 0.0002
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record