ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIRf345
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAAAGGCCTCCGCCCTTC miRNA* AGGGCAGAGCTTTTGGTTTT mismatches: 2 bulges: 1 |
pre-miRNA
CCACTTCTTGACTGGAGGGGACACCAAAGGCCTCCGCCCTTCCATCCCTTGTATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCAAA
GAGT
dot-bracket secondary structure
..((((.(((((....(((((.(((((((((.((.((((((((.((..((((....)))).)))))))))).))))))))))).))))).....))))).
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCACTTCTTGACTGGAGGGGACACCAAAGGCCTCCGCCCTTCCATCCCTTGTATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCAAA
GAGT
dot-bracket secondary structure
..((((.(((((....(((((.(((((((((.((.((((((((.((..((((....)))).)))))))))).))))))))))).))))).....))))).
))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12309-akr: 1e-25 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
