ABOUT THIS RECORDspecies: Coccomyxa sp. C-169
miRNA family: MIRf60
source: miRNEST
Taxonomy by NCBI:
Coccomyxa sp. C-169 Coccomyxa Coccomyxaceae Trebouxiophyceae incertae sedis Trebouxiophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGTCACGTGACGCCTGGGC miRNA* CCAGGCCTCATCAGGGCGTCTA mismatches: 4 bulges: 1 |
pre-miRNA
AGGAACCAGCCAACAAATGTAGGCGTCACGTGACGCCTGGGCTTTGTGATTAGGGGACATGGGTTTACCCATGCCCTCACGGTGGCGAGGAATATCATGC
CCTTGGCACGATTGCCCTCTGTCTCCTTAATCACGCCCCAGGCCTCATCAGGGCGTCTATATTTCATTTTATTTTAT
dot-bracket secondary structure
.((......))...(((((((((((((..((((.(((((((...((((((((((((((.((((....)))).(((((...)).)))((((...(((.(((
(...)))).)))...)))).))).))))))))))).))))))).))))...))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGAACCAGCCAACAAATGTAGGCGTCACGTGACGCCTGGGCTTTGTGATTAGGGGACATGGGTTTACCCATGCCCTCACGGTGGCGAGGAATATCATGC
CCTTGGCACGATTGCCCTCTGTCTCCTTAATCACGCCCCAGGCCTCATCAGGGCGTCTATATTTCATTTTATTTTAT
dot-bracket secondary structure
.((......))...(((((((((((((..((((.(((((((...((((((((((((((.((((....)))).(((((...)).)))((((...(((.(((
(...)))).)))...)))).))).))))))))))).))))))).))))...))))))))))))).............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
