ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIR1318
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGGAGAGATGAAACCGAAG miRNA* TCGGTGTCATCGTCCTGCGT mismatches: 3 bulges: 1 |
pre-miRNA
AGGTTCCCTTCGCAGGAGAGATGAAACCGAAGATTATTCCGGTTTCTACAGCCAAGAGATAGGGATGGTCGTCGGTGTCATCGTCCTGCGTTAAGGAAA
dot-bracket secondary structure
...((((...(((((((..(((((.(((((.(((((((((.((((((.......)))))).))))))))).))))).))))).)))))))....)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGTTCCCTTCGCAGGAGAGATGAAACCGAAGATTATTCCGGTTTCTACAGCCAAGAGATAGGGATGGTCGTCGGTGTCATCGTCCTGCGTTAAGGAAA
dot-bracket secondary structure
...((((...(((((((..(((((.(((((.(((((((((.((((((.......)))))).))))))))).))))).))))).)))))))....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC miR1318: 1e-37 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1318 from microPC (MNEST045815) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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