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Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST000466
species:
Coffea canephora
miRNA family:
MIR1318
source:
miRNEST
Taxonomy by NCBI:
Coffea canephora
Coffea
Coffeeae
Ixoroideae
Rubiaceae
Gentianales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCAGGAGAGATGAAACCGAAG
miRNA*
TCGGTGTCATCGTCCTGCGT
mismatches:
3
bulges:
1
View larger
pre-miRNA
AGGTTCCCTTC
GCAGGAGAGATGAAACCGAAG
ATTATTCCGGTTTCTACAGCCAAGAGATAGGGATGGTCG
TCGGTGTCATCGTCCTGCGT
TAAGGAAA
dot-bracket secondary structure
...((((...(
((((((..(((((.(((((.(
((((((((.((((((.......)))))).))))))))).
))))).))))).))))))).
...)))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
miR1318
:
1e-37
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
miR1318
from microPC (
MNEST045815
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record