miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000468
species: Coffea canephora
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCGGTTCAATAAAGCTGTGG

miRNA*
 ACAGCTTTCTTGAACTGCATC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC

dot-bracket secondary structure
)...(((((((.((.((.(((((((((((((((.((((((((((((..((.((((..((((((.....(((...((....))..))))))))))))).)).
..))).))))))))).))))))))))))))).)).)).)))))))..


SIMILARITIES
miRBase csi-MIR396b: 8.0E-9

PMRD lja-miR396: 3.0E-8

microPC miR396: 1.0E-56		UniProt no hits

RFAM 6MIR396: 2.0E-6		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045064)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;