ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGGTTCAATAAAGCTGTGG miRNA* ACAGCTTTCTTGAACTGCATC mismatches: 2 bulges: 0 |
pre-miRNA
ATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC
dot-bracket secondary structure
...(((((((.((.((.(((((((((((((((.((((((((((((..((.((((..((((((.....(((...((....))..))))))))))))).)).
..))).))))))))).))))))))))))))).)).)).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC
dot-bracket secondary structure
...(((((((.((.((.(((((((((((((((.((((((((((((..((.((((..((((((.....(((...((....))..))))))))))))).)).
..))).))))))))).))))))))))))))).)).)).)))))))..
SIMILARITIES| miRBase csi-MIR396b: 0.000000008 PMRD lja-miR396: 0.00000003 microPC miR396: 1e-56 | UniProt no hits RFAM MIR396: 0.000002 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045064) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
