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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST000468
species: Coffea canephora
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCGGTTCAATAAAGCTGTGG

miRNA*
 ACAGCTTTCTTGAACTGCATC

mismatches: 2
bulges: 0
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pre-miRNA
 ATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC

dot-bracket secondary structure
...(((((((.((.((.(((((((((((((((.((((((((((((..((.((((..((((((.....(((...((....))..))))))))))))).)).
..))).))))))))).))))))))))))))).)).)).)))))))..


SIMILARITIES
miRBase csi-MIR396b: 0.000000008

PMRD lja-miR396: 0.00000003

microPC miR396: 1e-56		UniProt no hits

RFAM MIR396: 0.000002		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045064)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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