ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACATCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGATG mismatches: 2 bulges: 0 |
pre-miRNA
GATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGC
GATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACA
dot-bracket secondary structure
....(((((((.((.((.((((((((((.((((.((((((((((((..((.(((((.((((.........................))))..))))).))
...))).))))))))).)))).)))))))))).)).)).)))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGC
GATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACA
dot-bracket secondary structure
....(((((((.((.((.((((((((((.((((.((((((((((((..((.(((((.((((.........................))))..))))).))
...))).))))))))).)))).)))))))))).)).)).)))))))...
SIMILARITIES| miRBase gma-MIR396a: 0.0000005 PMRD gma-miR396a: 0.0000005 microPC miR396: 1e-56 | UniProt no hits RFAM MIR396: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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