ABOUT THIS RECORDspecies: Cryptomeria japonica
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GGATGAACTTGAGAACACACG mismatches: 1 bulges: 1 |
pre-miRNA
GAAAGGCAGGGATGAAGCCAACAGGGATGAACTTGAGAACACACGGCCATCATATAGCATGATTGCACACAGAAATTGTGTGTGCATAATGTGTTATTTG
ATTAGGCATGTGTTCTCAGGTCACCCCTGTTGGAGATATTTGCTAATCAAACCACCAA
dot-bracket secondary structure
....((((((.......(((((((((.(((.((((((((((((..(((((((.((((((((..((((((((.......))))))))...)))))))).))
))..))).))))))))))))))).))))))))).....))))))..............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAAGGCAGGGATGAAGCCAACAGGGATGAACTTGAGAACACACGGCCATCATATAGCATGATTGCACACAGAAATTGTGTGTGCATAATGTGTTATTTG
ATTAGGCATGTGTTCTCAGGTCACCCCTGTTGGAGATATTTGCTAATCAAACCACCAA
dot-bracket secondary structure
....((((((.......(((((((((.(((.((((((((((((..(((((((.((((((((..((((((((.......))))))))...)))))))).))
))..))).))))))))))))))).))))))))).....))))))..............
SIMILARITIES| miRBase bdi-MIR398c: 0.000008 PMRD ath-miR398c: 0.000008 microPC miR398: 1e-56 | UniProt no hits RFAM MIR398: 0.0001 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST045380) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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