ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
CAAGAAGAGGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCC
AAGCATACTCTCGCTCTTTCTCCTC
dot-bracket secondary structure
)..((.((((.(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))
).))))))))...)))..)))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAGAAGAGGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCC
AAGCATACTCTCGCTCTTTCTCCTC
dot-bracket secondary structure
)..((.((((.(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))
).))))))))...)))..)))).))
SIMILARITIES| miRBase ptc-MIR160d: 4.0E-10 PMRD oba-miR160: 4.0E-41 microPC miR160: 2.0E-42 | UniProt no hits RFAM 0mir-160: 7.0E-40 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045369) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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