ABOUT THIS RECORDspecies: Eucalyptus globulus
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTTCTTGGCTACA mismatches: 1 bulges: 0 |
pre-miRNA
TGCGTGTAGGTGTCGAAAGCATGTTGTGCAGCCAAGGATGACTTGCCGACTCTCTTTCTTCCTATTTATTTGGATTGGATCTATCTCCGTGTATGTTAAA
TTAATGGAAATAATGAAGTTGGCAAGTTGTTCTTGGCTACATGCTTCTTTCCGCTCCACATGCCAG
dot-bracket secondary structure
.((((((.((.((.((((((((((.....((((((((((((((((((((((.((.((.((.(((((.((((((..((((......))))......)))))
).))))).)).)).)))))))))))))))))))))))))))))))...))).)).))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCGTGTAGGTGTCGAAAGCATGTTGTGCAGCCAAGGATGACTTGCCGACTCTCTTTCTTCCTATTTATTTGGATTGGATCTATCTCCGTGTATGTTAAA
TTAATGGAAATAATGAAGTTGGCAAGTTGTTCTTGGCTACATGCTTCTTTCCGCTCCACATGCCAG
dot-bracket secondary structure
.((((((.((.((.((((((((((.....((((((((((((((((((((((.((.((.((.(((((.((((((..((((......))))......)))))
).))))).)).)).)))))))))))))))))))))))))))))))...))).)).))))))))...
SIMILARITIES| miRBase vvi-MIR169g: 0.0000000006 PMRD vvi-miR169g: 0.0000000006 microPC miR169: 1e-57 | UniProt no hits RFAM MIR169_2: 0.00000001 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST046292) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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