ABOUT THIS RECORDspecies: Euphorbia esula
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Euphorbia esula Euphorbia Euphorbieae Euphorbioideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATATTGGTGCGGTTCAATC miRNA* TTGAGCCGTGCCAATATCACG mismatches: 1 bulges: 0 |
pre-miRNA
TTCATGGGAGAAAAAATAACCAAAATACGAGATATTGGTGCGGTTCAATCGGAGAACTTTGCTCTTTGTTTAGAGAGCTATGTTGTTTGATTGAGCCGTGC
CAATATCACGTATGAATTAAAATTTATTTCTTTCT
dot-bracket secondary structure
)....((((((((.((........(((((.(((((((((((((((((((((((.(((...(((((((....)))))))...))).))))))))))))))))
))))))).)))))..........)).)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCATGGGAGAAAAAATAACCAAAATACGAGATATTGGTGCGGTTCAATCGGAGAACTTTGCTCTTTGTTTAGAGAGCTATGTTGTTTGATTGAGCCGTGC
CAATATCACGTATGAATTAAAATTTATTTCTTTCT
dot-bracket secondary structure
)....((((((((.((........(((((.(((((((((((((((((((((((.(((...(((((((....)))))))...))).))))))))))))))))
))))))).)))))..........)).)))))))).
SIMILARITIES| miRBase rco-MIR171b: 8.0E-18 PMRD ptc-miR171b: 7.0E-12 microPC miR171: 3.0E-42 | UniProt no hits RFAM 1MIR171_1: 1.0E-16 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046341) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
