ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCAAGGTGCCAAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
GATCTAATCAAGGTTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCA
AGCATGCATATATGTATATGGTCT
dot-bracket secondary structure
((((..........(((((.((((.((((.((.((((((((((...((((((.(((((((....)).)))))...)))))).)))))))))).)).))))
.))))))))).........)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATCTAATCAAGGTTGTGCTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCA
AGCATGCATATATGTATATGGTCT
dot-bracket secondary structure
((((..........(((((.((((.((((.((.((((((((((...((((((.(((((((....)).)))))...)))))).)))))))))).)).))))
.))))))))).........)))).
SIMILARITIES| miRBase bdi-MIR160c: 9e-39 PMRD sbi-miR160a: 3e-23 microPC miR160: 1e-41 | UniProt no hits RFAM mir-160: 6e-25 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045344) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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