ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCTGTATCTAGAC miRNA* CTAGATACGAATGTACCTAGA mismatches: 3 bulges: 0 |
pre-miRNA
TCTAGTACTCCCTCCGATCCAAATTAATTGACTCCATTTTATCTAGATACGAATGTACCTAGATGCGTTTGTTGACTAGATACATCTGTATCTAGACAAA
GTGGAGTCAATTAATTTGAATCGGAGGGAGTAGTAT
dot-bracket secondary structure
.....(((((((((((((.(((((((((((((((((((((.((((((((((.(((((.((((..((....))...)))).))))).)))))))))).)))
)))))))))))))))))).)))))))))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTAGTACTCCCTCCGATCCAAATTAATTGACTCCATTTTATCTAGATACGAATGTACCTAGATGCGTTTGTTGACTAGATACATCTGTATCTAGACAAA
GTGGAGTCAATTAATTTGAATCGGAGGGAGTAGTAT
dot-bracket secondary structure
.....(((((((((((((.(((((((((((((((((((((.((((((((((.(((((.((((..((....))...)))).))))).)))))))))).)))
)))))))))))))))))).)))))))))))))....
SIMILARITIES| miRBase far-MIR1122: 0.0004 PMRD hpi-miR1122: 0.0004 microPC miR1122: 5e-25 | UniProt no hits RFAM MIR1122: 0.0000005 | most similar mature miRNAs |
Identical with: miR1122 from microPC (MNEST045186) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
