ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: miR172c
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGCATCATCAAGATTCACA miRNA* AGAATCCTGATGATGCTGCAG mismatches: 3 bulges: 0 |
pre-miRNA
TGATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGA
TTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATT
dot-bracket secondary structure
)..............(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))
))).))))).)))))))))).)))))))))..))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGA
TTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATT
dot-bracket secondary structure
)..............(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))
))).))))).)))))))))).)))))))))..))))))).............
SIMILARITIES| miRBase ghr-MIR172: 1.0E-66 PMRD ath-miRf11051-akr: 1.0E-10 microPC miR172: 0.0001 | UniProt no hits RFAM 2mir-172: 9.0E-9 | most similar mature miRNAs |
Identical with: ghr-MIR172 from miRBase (MNEST041050) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
