miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST000799
species: Gossypium hirsutum
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GGGTGCCACCTAAGAACACAGG

mismatches: 1
bulges: 2
View larger
pre-miRNA
 TCACCCACTTAGCCAAGATGGTTTACCCCAGAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTTTGG
GGTACATATATCTTCGCCTATTTTCT

dot-bracket secondary structure
...........((.((((((...(((((((((((((((..((((.(((((((((((.((...........)).))))))))))).)))))))))))))))
))))....)))))).)).........


SIMILARITIES
miRBase gra-MIR398: 5e-56

PMRD ghr-miR398: 3e-32

microPC miR398: 3e-32		UniProt no hits

RFAM MIR398: 0.0000005		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046499)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;