miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000799
species: Gossypium hirsutum
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GGGTGCCACCTAAGAACACAGG

mismatches: 1
bulges: 2
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pre-miRNA
 TCACCCACTTAGCCAAGATGGTTTACCCCAGAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTTTGG
GGTACATATATCTTCGCCTATTTTCT

dot-bracket secondary structure
...........((.((((((...(((((((((((((((..((((.(((((((((((.((...........)).))))))))))).)))))))))))))))
))))....)))))).)).........


SIMILARITIES
miRBase gra-MIR398: 5e-56

PMRD ghr-miR398: 3e-32

microPC miR398: 3e-32		UniProt no hits

RFAM MIR398: 0.0000005		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046499)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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