ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR3476
source: miRNEST
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAACTGGGTTTGTTGGCTGC miRNA* AGCCAACAACATCAGTTCTAA mismatches: 4 bulges: 0 |
pre-miRNA
TGATGCAGTTCAGTATTCCAGTATCTTGATTTGAACTGGGTTTGTTGGCTGCTGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAAACACT
TTTCAGGAGCCAACAACATCAGTTCTAACCAGGACTGGGCTGAGATTTACAAGCTC
dot-bracket secondary structure
........((((((...((((..(((((.((.(((((((..(((((((((.((((((((((((...))))))))..........................
..)))).)))))))))..))))))).)).)))))))))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGATGCAGTTCAGTATTCCAGTATCTTGATTTGAACTGGGTTTGTTGGCTGCTGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAAACACT
TTTCAGGAGCCAACAACATCAGTTCTAACCAGGACTGGGCTGAGATTTACAAGCTC
dot-bracket secondary structure
........((((((...((((..(((((.((.(((((((..(((((((((.((((((((((((...))))))))..........................
..)))).)))))))))..))))))).)).)))))))))))))))............
SIMILARITIES| miRBase ghr-MIR3476: 6e-56 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
