ABOUT THIS RECORDspecies: Helianthus exilis
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATGTTGGTTCGGTTCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GTACTGCTTTGCGACTTCTATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTT
TGATTGAGCCGTGCCAATATCACGTGCATGTTGCTTCTAAATTTTCACAAGTCTTTTGTAA
dot-bracket secondary structure
............(((((...(((((((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))
).))))))))).))))))))).))).))....))))))....))))).)))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTACTGCTTTGCGACTTCTATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTT
TGATTGAGCCGTGCCAATATCACGTGCATGTTGCTTCTAAATTTTCACAAGTCTTTTGTAA
dot-bracket secondary structure
............(((((...(((((((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))
).))))))))).))))))))).))).))....))))))....))))).)))))........
SIMILARITIES| miRBase rco-MIR171a: 0.0000000000006 PMRD vvi-miR171c: 0.0000000005 microPC miR171: 2e-43 | UniProt no hits RFAM MIR171_1: 0.00000000001 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST044805) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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