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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000860
species: Helianthus exilis
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACG

miRNA*
 AGATGTTGGTTCGGTTCAATA

mismatches: 2
bulges: 0
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pre-miRNA
 GTACTGCTTTGCGACTTCTATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTT
TGATTGAGCCGTGCCAATATCACGTGCATGTTGCTTCTAAATTTTCACAAGTCTTTTGTAA

dot-bracket secondary structure
............(((((...(((((((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))
).))))))))).))))))))).))).))....))))))....))))).)))))........


SIMILARITIES
miRBase rco-MIR171a: 0.0000000000006

PMRD vvi-miR171c: 0.0000000005

microPC miR171: 2e-43		UniProt no hits

RFAM MIR171_1: 0.00000000001		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST044805)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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