ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATGTTGGTTCGGTTCAATA mismatches: 2 bulges: 0 |
pre-miRNA
TATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATGGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATA
TCACGTGCATGTTGCTTCTAAAT
dot-bracket secondary structure
)......((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))
)).))).))....))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGAGAGGGAGCTGTTGAACGAGATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATGGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATA
TCACGTGCATGTTGCTTCTAAAT
dot-bracket secondary structure
)......((((((...((.(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))
)).))).))....))))))....
SIMILARITIES| miRBase rco-MIR171a: 4.0E-13 PMRD vvi-miR171c: 4.0E-10 microPC miR171: 2.0E-43 | UniProt no hits RFAM 1MIR171_1: 7.0E-12 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST044914) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
