ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR2025
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCCGC miRNA* AGGTGTGACATGAGAACACAC mismatches: 5 bulges: 0 |
pre-miRNA
ACCAACAGGTGTGACATGAGAACACACGATATACTTCGATATTTTTCACGTGTTCTCAGGTCGCCCCCGCTGAATTTTCT
dot-bracket secondary structure
.......((.(((((.(((((((((..((.(((......)))...))..))))))))).))))).))....((....)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCAACAGGTGTGACATGAGAACACACGATATACTTCGATATTTTTCACGTGTTCTCAGGTCGCCCCCGCTGAATTTTCT
dot-bracket secondary structure
.......((.(((((.(((((((((..((.(((......)))...))..))))))))).))))).))....((....)).
SIMILARITIES| miRBase tae-MIR398: 0.000004 PMRD tae-miR2025: 0.000004 microPC miR398: 3e-28 | UniProt no hits RFAM MIR398: 0.000001 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046312) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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