ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGACNCCGGGTCCNAAA mismatches: 4 bulges: 0 |
pre-miRNA
TTTCGCGTCATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCAT
GACTCCATCATGGTTCA
dot-bracket secondary structure
.....(((.((((..((((.(((((((((..((.(((((.(((..........(((((.(((....))).)))))))).))))).))..))))))))).)
))).)))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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TTTCGCGTCATGGTTGTCGAGGGGAATGACNCCGGGTCCNAAAGAGAGACNCTCGCATGGCGTGCGCGTGGTGCGTTTCGGACCAGGCTTCATTCCCCAT
GACTCCATCATGGTTCA
dot-bracket secondary structure
.....(((.((((..((((.(((((((((..((.(((((.(((..........(((((.(((....))).)))))))).))))).))..))))))))).)
))).)))).))).....
SIMILARITIES| miRBase hvu-MIR166: 2e-46 PMRD hvv-miR166: 2e-33 microPC miR166: 2e-33 | UniProt no hits RFAM mir-166: 4e-38 | most similar mature miRNAs |
Identical with: hvv-miR166 from PMRD (MNEST048660) |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
