ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1135
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCGACAAGTAATTCCGGAC miRNA* CTGGAATTACTTGTTGGAGAA mismatches: 1 bulges: 0 |
pre-miRNA
GGATAAAATGTACTACCTCGGTCTGGAATTACTTGTTGGAGAAATAGATGTATCCAAGATGTATTTTAAGTTCCAAGATTCATCCATTTTTAACCATTTC
TGCGACAAGTAATTCCGGACNGAAGGGTGTATCCAAGTT
dot-bracket secondary structure
(((((.....((((...((.((((((((((((((((((.((((((............((((.(((((.......))))).))))...........)))))
).)))))))))))))))))).))..))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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GGATAAAATGTACTACCTCGGTCTGGAATTACTTGTTGGAGAAATAGATGTATCCAAGATGTATTTTAAGTTCCAAGATTCATCCATTTTTAACCATTTC
TGCGACAAGTAATTCCGGACNGAAGGGTGTATCCAAGTT
dot-bracket secondary structure
(((((.....((((...((.((((((((((((((((((.((((((............((((.(((((.......))))).))))...........)))))
).)))))))))))))))))).))..))))))))).....
SIMILARITIES| miRBase tae-MIR1135: 0.00003 PMRD ata-miR1122: 0.0000000005 microPC miR1135: 0.00003 | UniProt no hits RFAM MIR1122: 0.000000000009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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