ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1135
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCGACAAGTAATTCCGGAC miRNA* CTGGAGATACTTGTCAGGGAA mismatches: 4 bulges: 0 |
pre-miRNA
CATAGCTACATACTCCCTACATCTGGAGATACTTGTCAGGGAAATGGATTATCTAAACGTGTTTTAGTTTTAATGCATCCATTTTCCATTTCTGCGACAA
GTAATTCCGGACGAAGGGAGTCTATAAGAAG
dot-bracket secondary structure
...........(((((((...(((((((.((((((((..(((((((((..........((((.(((....))).))))......)))))))))..)))))
))).)))))))...)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATAGCTACATACTCCCTACATCTGGAGATACTTGTCAGGGAAATGGATTATCTAAACGTGTTTTAGTTTTAATGCATCCATTTTCCATTTCTGCGACAA
GTAATTCCGGACGAAGGGAGTCTATAAGAAG
dot-bracket secondary structure
...........(((((((...(((((((.((((((((..(((((((((..........((((.(((....))).))))......)))))))))..)))))
))).)))))))...)))))))..........
SIMILARITIES| miRBase tae-MIR1135: 0.0000001 PMRD ata-miR1122: 0.000000007 microPC miR1128: 0.000006 | UniProt no hits RFAM MIR1122: 0.00000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
