ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTTCCTAAATATAAGTC miRNA* CTATATGTCTACATACGGAGCA mismatches: 5 bulges: 1 |
pre-miRNA
CATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG
dot-bracket secondary structure
........((.((((((...((.((((((((.....((....))..))).))))).))...)))))).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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CATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG
dot-bracket secondary structure
........((.((((((...((.((((((((.....((....))..))).))))).))...)))))).))....
SIMILARITIES| miRBase tae-MIR1126: 0.00000005 PMRD tae-miR1126: 0.00000005 microPC miR1436: 2e-16 | UniProt no hits RFAM MIR1122: 1e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
