ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTTCCTAAATATAAGTC miRNA* CTATATGTCTACATACGGAGCA mismatches: 5 bulges: 1 |
pre-miRNA
GCATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG
dot-bracket secondary structure
)........((.((((((...((.((((((((.....((....))..))).))))).))...)))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
GCATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTAAGCGATTTCACTATATGTCTACATACGGAGCAAAATG
dot-bracket secondary structure
)........((.((((((...((.((((((((.....((....))..))).))))).))...)))))).))....
SIMILARITIES| miRBase tae-MIR1126: 5.0E-8 PMRD tae-miR1126: 5.0E-8 microPC miR1436: 2.0E-16 | UniProt no hits RFAM 2MIR1122: 1.0E-27 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
