ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf231
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATTGATTTGGCCGGGTGT miRNA* GCCGTGGTATAATAATTTG mismatches: 3 bulges: 2 |
pre-miRNA
GGTACCCCTGATGAATTGATTTGGCCGGGTGTGACAAAAATGCCGTGGTATAATAATTTG
dot-bracket secondary structure
............(((((.(((..(((((((((.......))))).))))..)))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGTACCCCTGATGAATTGATTTGGCCGGGTGTGACAAAAATGCCGTGGTATAATAATTTG
dot-bracket secondary structure
............(((((.(((..(((((((((.......))))).))))..)))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5JK68|CDKC2_ORYSJ: 0.000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
