miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000983
species: Hordeum vulgare
miRNA family: MIRf231
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAATTGATTTGGCCGGGTGT

miRNA*
GCCGTGGTATAATAATTTG

mismatches: 3
bulges: 2

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pre-miRNA
GGTACCCCTGATGAATTGATTTGGCCGGGTGTGACAAAAATGCCGTGGTATAATAATTTG

dot-bracket secondary structure
............(((((.(((..(((((((((.......))))).))))..)))))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q5JK68|CDKC2_ORYSJ: 0.000005

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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