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ABOUT THIS RECORD
ID:
MNEST000997
species:
Hordeum vulgare
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTGGGACAGAGGGAATATT
miRNA*
TACTCCCTCCGTTTCAAAATA
mismatches:
3
bulges:
0
View larger
pre-miRNA
AATCATATATGC
TACTCCCTCCGTTTCAAAATA
AGTGTCTTAAGCTTAGTACAATTTTATACTAGAACTAGTACAAAGTTGAAACAGATA
TTTTGGGACA
GAGGGAATATT
ATCAACTAA
dot-bracket secondary structure
........(((.
((.((((((.(((((((((((
..(((.((((.(((.((((..(((((...)))))...)))).))))))).)))..))
))))))))).
)))))).)).)
)).......
SIMILARITIES
miRBase
osa-MIR812a
:
0.0004
PMRD
osa-miR812a
:
0.0004
microPC
miR1439
:
1e-31
UniProt
no hits
RFAM
MIR1122: 6e-28
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
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