ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIRf1463
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGATTCCGTAGTCCATGAGCG miRNA* TCCATGGACGCGGCGTCGAA mismatches: 2 bulges: 1 |
pre-miRNA
TGGACGCTAGGAGCACCGCAGCGAGCGTAGGGACGCCGGTGTGTCCATGGACGCGGCGTCGAACACGGAACAGCGGTCGGCGGCCTCGATTCCGTAGTCCA
TGAGCGGGCGGCGCTCGAGCTCGTCGTCGTGCTGGCGTGCGCACT
dot-bracket secondary structure
)..(((((...(((((.((.((((((...(((.(((((.(.(((.(((((((((((.(((((....((....((.....))..))))))).)))).)))))
)).))).)))))))))..)))))).)).)))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TGGACGCTAGGAGCACCGCAGCGAGCGTAGGGACGCCGGTGTGTCCATGGACGCGGCGTCGAACACGGAACAGCGGTCGGCGGCCTCGATTCCGTAGTCCA
TGAGCGGGCGGCGCTCGAGCTCGTCGTCGTGCTGGCGTGCGCACT
dot-bracket secondary structure
)..(((((...(((((.((.((((((...(((.(((((.(.(((.(((((((((((.(((((....((....((.....))..))))))).)))).)))))
)).))).)))))))))..)))))).)).)))))))))).......
SIMILARITIES| miRBase no hits PMRD osa-miRf10620-akr: 3.0E-11 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
