miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum



ABOUT THIS RECORD

ID: MNEST001009
species: Hordeum vulgare
miRNA family: MIRf1463
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGATTCCGTAGTCCATGAGCG

miRNA*
TCCATGGACGCGGCGTCGAA

mismatches: 2
bulges: 1

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pre-miRNA
GGACGCTAGGAGCACCGCAGCGAGCGTAGGGACGCCGGTGTGTCCATGGACGCGGCGTCGAACACGGAACAGCGGTCGGCGGCCTCGATTCCGTAGTCCA
TGAGCG
GGCGGCGCTCGAGCTCGTCGTCGTGCTGGCGTGCGCACT


dot-bracket secondary structure
..(((((...(((((.((.((((((...(((.(((((.(.(((.(((((((((((.(((((....((....((.....))..))))))).)))).)))))
)).)))
.)))))))))..)))))).)).)))))))))).......



SIMILARITIES
miRBase no hits

PMRD osa-miRf10620-akr: 0.00000000003

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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