ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCCGTAAACTAATATAAGAG miRNA* TTAATATTAGTTGACAGAGGG mismatches: 3 bulges: 0 |
pre-miRNA
TTTTCTACTCCCTCCGTAAACTAATATAAGAGCATTTAGAACACTATTTTAATAATCTAAACGCTTTAATATTAGTTGACAGAGGGAGAATTTC
dot-bracket secondary structure
.......(((((((.((.(((((((((.(((((.((((((....(((....))).)))))).))))).))))))))).)).)))))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTCTACTCCCTCCGTAAACTAATATAAGAGCATTTAGAACACTATTTTAATAATCTAAACGCTTTAATATTAGTTGACAGAGGGAGAATTTC
dot-bracket secondary structure
.......(((((((.((.(((((((((.(((((.((((((....(((....))).)))))).))))).))))))))).)).)))))))......
SIMILARITIES| miRBase tae-MIR1121: 0.00000000007 PMRD tmo-miR1120: 0.000000000001 microPC miR1121: 0.000004 | UniProt no hits RFAM MIR1122: 4e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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