ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTTTGGGACGGAGGGAAT miRNA* TCCCTTCATTCCAAATTAAGT mismatches: 3 bulges: 0 |
pre-miRNA
CAAATGATGTACTCCCTTCATTCCAAATTAAGTGACCCAAATTTAGAACTAAGTTAGTACAAATATAGTACTAAAGCAACGGCACTTATTTTGGGACGGA
GGGAATATAAACCGA
dot-bracket secondary structure
.......((((.(((((((.(((((((.((((((.((....(((((.((((.(((......))).)))).))))).....)))))))).))))))).)))
)))).))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAATGATGTACTCCCTTCATTCCAAATTAAGTGACCCAAATTTAGAACTAAGTTAGTACAAATATAGTACTAAAGCAACGGCACTTATTTTGGGACGGA
GGGAATATAAACCGA
dot-bracket secondary structure
.......((((.(((((((.(((((((.((((((.((....(((((.((((.(((......))).)))).))))).....)))))))).))))))).)))
)))).))))......
SIMILARITIES| miRBase osa-MIR1862c: 0.00009 PMRD osa-miRf10381-akr: 0.000006 microPC miR1439: 0.00002 | UniProt no hits RFAM MIR1122: 1e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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